GHSA-rxpr-wq63-jr7p
Open Babel has a NULL pointer dereference in CDXML OBAtom::GetExplicitValence
Details
### Summary
A memory-safety vulnerability in Open Babel's CDXML file format parser caused a NULL pointer dereference when reading a crafted input file.
### Details
The flaw was in `OBAtom::GetExplicitValence` as called from the CDXML parser. A malformed fragment caused the parser to invoke the method on a NULL atom pointer.
### Impact
Open Babel is a C++ library and CLI used to read and write chemistry file formats; it is shipped by Linux distributions and embedded in services that may parse untrusted input. Triggering this vulnerability requires the victim to open a malicious CDXML file with the `obabel` tool, the `OBConversion` API, or any of the language bindings (Python, Ruby, Java, R, Perl, C#, PHP).
### Affected versions
All releases up to and including 3.1.1.
### Patched version
3.2.0 (released 2026-05-26).
### Patch
Fix commit: https://github.com/openbabel/openbabel/commit/e23a224b Tracked in #2862.
A minimized reproducer for this CVE is checked in under `test/files/fuzz_regress/` and is exercised on every CI build under ASAN+UBSAN by the `fuzzregresstest` harness.
### Credit
Reported by Vedant Madane (@VedantMadane) via VulDB.
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Affected packages
References
- https://github.com/openbabel/openbabel/security/advisories/GHSA-rxpr-wq63-jr7p [WEB]
- https://nvd.nist.gov/vuln/detail/CVE-2026-3408 [ADVISORY]
- https://github.com/openbabel/openbabel/issues/2848 [WEB]
- https://github.com/openbabel/openbabel/pull/2862 [WEB]
- https://github.com/VedantMadane/openbabel/commit/e23a224b8fd9d7c2a7cde9ef4ec6afb4c05aa08a [WEB]
- https://github.com/oneafter/0128/blob/main/ob3/repro.cdxml [WEB]
- https://github.com/openbabel/openbabel [PACKAGE]
- https://vuldb.com/?ctiid.348303 [WEB]
- https://vuldb.com/?id.348303 [WEB]
- https://vuldb.com/?submit.763756 [WEB]